ascat.m.plotRawData

Plot tumour and germline BAF and LogR

ascat.m.plotRawData(ASCATobj, raw_LogR, pch, cex, lim_logR)

Arguments

ASCATobj

an ASCAT object (e.g. data structure from ascat.loadData)

raw_LogR

vector with the LogR values before correction

pch

type of data points in plot

cex

size of data points in plot

lim_logR

y-axis limits on logR plot

Value

Produces png files showing the logR and BAF values for tumour and germline samples

Author

Peter Van Loo