Run allele-specific methylation analysis pipeline

Run allele-specific methylation analysis pipeline

asm_pipeline(tumor, germline = NULL, infiltrates = NULL, origin = NULL, config)

Arguments

tumor.

CamSample object for tumor sample.

germline.

CamSample object for germline sample. Used for CNA calling.

infiltrates.

CamSample object for infiltrating normal sample. Used for deconvolution.

origin.

CamSample object for cell of origin sample. Used for differential methylation.

config.

CamConfig object.