get_msp1_fragments

get msp1 fragments

get_msp1_fragments(dt, build, path_to_CAMDAC, outfile)

Arguments

dt

data.table object with containing all covered CCGGs in the sample

build

Character, Either "hg19", "hg38", "GRCH37","GRCH38"

path_to_CAMDAC

Character string containting the path to the CAMDAC dir including dir name e.g. "~/CAMDAC/"

outfile

character srting with output filename

Author

elizabeth larose cadieux