CAMDAC analysis pipeline

CAMDAC analysis pipeline

pipeline(tumor, germline, infiltrates, origin, config)

Arguments

tumor

Tumor CamSample() object for deconvultion.

germline

Patient-matched normal CamSample() object. May be NULL if tumor has CNA calls already.

infiltrates

Normal CamSample() as a proxy for infiltrating normal methylation.

origin

Normal CamSample() representing cell of origin for tumor-normal differential methylation.

config

Configuration built with CamConfig().